In major breakthrough, scientists at the Institute of Life Sciences, Bhubaneswar and SRM Institute of Science and Technology, Tamil Nadu have, for the first time ever, identified a reference-grade whole genome sequence of a highly salt-tolerant and salt-secreting true-mangrove species, Avicennia marina, according to information provided by the government’s Department of Biotechnology.
The genomic resources generated in the study will pave the way for researchers to study the potential of the identified genes for developing drought and salinity tolerant varieties of important crop species of the coastal region that is expected to yield a huge gain for India with its massive 7,500 km coastline and two major island systems.
Avicennia marina – a salt tolerant mangrove species
This study assumes significance as agriculture productivity globally is affected due to abiotic stress factors such as limited water availability and salinization of soil and water. Availability of water is a significant challenge to crop production in dryland areas, accounting for ~40 percent of the world’s total land area. Salinity, is prevalent in ~900 million hectares globally (with an estimated 6.73 million ha in India), and it is estimated to cause an annual loss of USD 27 billion.
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Mangroves are a unique group of species found in marshy intertidal estuarine regions and survive a high degree of salinity through several adaptive mechanisms. Mangroves are important resources for the coastal region and are of great ecological and economic value. They form a link between marine and terrestrial ecosystems, protect shorelines, provide habitat for a diverse array of terrestrial organisms.
Avicennia marina is one of the most prominent mangroves species found in all mangrove formations in India. It is a salt-secreting and extraordinarily salt-tolerant mangrove species that grows optimally in 75% seawater and tolerates >250% seawater. It is among the rare plant species, which can excrete 40% of the salt through the salt glands in the leaves, besides its extraordinary capacity to exclude salt entry to the roots.
Gene Map of A. marina
This study published in the recent issue of the Nature Communications Biology reports the assemblage of a 456.6 Mb of the estimated 462.7 Mb A. marina genome (98.7% genome coverage) in 31 chromosomes derived from 88 scaffolds and 252 contigs. The percentage of genomes in gaps was 0.26%, thereby proving it to be a high-level assembly. The A. marina genome assembled in this study is nearly complete and can be considered as a reference-grade genome reported so far for any mangrove species globally and the first report from India”.
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This study employed the latest genome sequencing and assembling technologies and identified 31,477 protein-coding genes and a “salinome” consisting of 3246 salinity-responsive genes and homologs of 614 experimentally validated salinity tolerance genes. The study reported identification of 614 genes, including 159 transcription factors, which are homologous to the genes that were functionally validated for salinity tolerance in transgenic systems.
Institute of Life Sciences of the Department of Biotechnology, has a broad vision of carrying out high-quality multidisciplinary research in the area of life sciences. The goal is for overall development and betterment of human health, longevity, agriculture and environment.
The Department of Biotechnology boosts and augments the development of the biotechnology ecosystem in India through its expansion and application in agriculture, healthcare, animal sciences, environment, and industry.
